Abstract
Supplemental Data for:
Transposable elements in bats show differential accumulation determined by class and functionality
Nicole S Paulat, Erin McGuire, Krishnamurthy Subramanian, Austin B. Osmanski, Diana D. Moreno-Santillán, David A Ray, Jinchuan Xing
Bat_TE_7Species.tar.gz: Genome annotation files for seven bat species
Folder content:
CGI: CpG Island definition files in bed format.
Gene: Gene annotation files in gtf format.
RepeatMasker: Transposable element annotation files in Repeatmasker output format.
mammal_library.fa.gz: mammalian TE consensus library
This TE library is a combination of mammalian TE sequences that were available from RepBase as well as those which were manually curated by the Zoonomia project.
Briefly, the programs RepeatModeler, RepeatMasker, and other custom scripts (https://github.com/aosmanski/Zoonomia_TEs) were used to curate over 8,000 novel TE sequences from 248 mammal genome assemblies.
Detailed information on the curation process is described in the Zoonomia paper (Osmanski et al. 2022. Insights into mammalian TE diversity via the curation of 248 mammalian genome assemblies. Science. In Review).