Data Deposition and Annotation at the Worldwide Protein Data Bank

Shuchismita Dutta; Kyle Burkhardt; Jasmine Young; Ganesh Swaminathan; Takanori Matsuura; Kim Henrick; Haruki Nakamura; Helen Berman

doi:10.1007/s12033-008-9127-7

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Data Deposition and Annotation at the Worldwide Protein Data Bank

Journal article

Peer reviewed

Data Deposition and Annotation at the Worldwide Protein Data Bank

Shuchismita Dutta, Kyle Burkhardt, Jasmine Young, Ganesh Swaminathan, Takanori Matsuura, Kim Henrick, Haruki Nakamura and Helen Berman

Molecular biotechnology, Vol.42(1), pp.1-13

05/2009

DOI: https://doi.org/10.1007/s12033-008-9127-7

PMID: 19082769

Abstract

Annotation

Biochemistry, general

Biological Techniques

Biotechnology

Cell Biology

Chemistry

Deposition

Human Genetics

Protein Data Bank (PDB)

Protein Science

Validation

wwPDB

The Protein Data Bank (PDB) is the repository for three-dimensional structures of biological macromolecules, determined by experimental methods. The data in the archive is free and easily available via the Internet from any of the worldwide centers managing this global archive. These data are used by scientists, researchers, bioinformatics specialists, educators, students, and general audiences to understand biological phenomenon at a molecular level. Analysis of this structural data also inspires and facilitates new discoveries in science. This chapter describes the tools and methods currently used for deposition, processing, and release of data in the PDB. References to future enhancements are also included.

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Details

Title: Data Deposition and Annotation at the Worldwide Protein Data Bank
Creators: Shuchismita Dutta - Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), Department of Chemistry and Chemical Biology Rutgers, The State University of New Jersey 610 Taylor Road Piscataway NJ 08854-8087 USA
Kyle Burkhardt - Office of Research and Project Administration Princeton University 4 New South Building Princeton NJ 08544 USA
Jasmine Young - Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), Department of Chemistry and Chemical Biology Rutgers, The State University of New Jersey 610 Taylor Road Piscataway NJ 08854-8087 USA
Ganesh Swaminathan - The Macromolecular Structure Database at the European Bioinformatics Institute PDB-e EMBL Outstation-Hinxton Cambridge CB10 1SD UK
Takanori Matsuura - Protein Data Bank Japan (PDBj), Institute for Protein Research Osaka University 3-2 Yamadaoka Suita Osaka 565-0871 Japan
Kim Henrick - The Macromolecular Structure Database at the European Bioinformatics Institute PDB-e EMBL Outstation-Hinxton Cambridge CB10 1SD UK
Haruki Nakamura - Protein Data Bank Japan (PDBj), Institute for Protein Research Osaka University 3-2 Yamadaoka Suita Osaka 565-0871 Japan
Helen Berman - Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), Department of Chemistry and Chemical Biology Rutgers, The State University of New Jersey 610 Taylor Road Piscataway NJ 08854-8087 USA
Publication Details: Molecular biotechnology, Vol.42(1), pp.1-13
Date published: 05/2009
Publisher: Humana Press Inc
Academic Unit: Chemistry and Chemical Biology (SAS); Institute for Quantitative Biomedicine
Language: English
Resource Type: Journal article
Identifiers: 991031665683504646