Ligand Depot: a data warehouse for ligands bound to macromolecules

Zukang Feng; Li Chen; Himabindu Maddula; Ozgur Akcan; Rose Oughtred; Helen M Berman; John Westbrook

doi:10.1093/bioinformatics/bth214

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Ligand Depot: a data warehouse for ligands bound to macromolecules

Journal article

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Ligand Depot: a data warehouse for ligands bound to macromolecules

Zukang Feng, Li Chen, Himabindu Maddula, Ozgur Akcan, Rose Oughtred, Helen M Berman and John Westbrook

Bioinformatics, Vol.20(13), pp.2153-2155

09/01/2004

DOI: https://doi.org/10.1093/bioinformatics/bth214

PMID: 15059838

Abstract

Ligand Depot is an integrated data resource for finding information about small molecules bound to proteins and nucleic acids. The initial release (version 1.0, November, 2003) focuses on providing chemical and structural information for small molecules found as part of the structures deposited in the Protein Data Bank. Ligand Depot accepts keyword-based queries and also provides a graphical interface for performing chemical substructure searches. A wide variety of web resources that contain information on small molecules may also be accessed through Ligand Depot. Availability: Ligand Depot is available at http://ligand-depot.rutgers.edu/. Version 1.0 supports multiple operating systems including Windows, Unix, Linux and the Macintosh operating system. The current drawing tool works in Internet Explorer, Netscape and Mozilla on Windows, Unix and Linux.

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Title: Ligand Depot: a data warehouse for ligands bound to macromolecules
Creators: Zukang Feng - Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854, USA
Li Chen - Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854, USA
Himabindu Maddula - Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854, USA
Ozgur Akcan - Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854, USA
Rose Oughtred - Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854, USA
Helen M Berman - Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854, USA
John Westbrook - Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854, USA
Publication Details: Bioinformatics, Vol.20(13), pp.2153-2155
Date published: 09/01/2004
Publisher: Oxford University Press
Academic Unit: Chemistry and Chemical Biology (SAS); Institute for Quantitative Biomedicine; Pharmacology (RWJMS)
Language: English
Resource Type: Journal article
Identifiers: 991031664309904646