Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

Andrej Sali; Helen M Berman; Torsten Schwede; Jill Trewhella; Gerard Kleywegt; Stephen K Burley; John Markley; Haruki Nakamura; Paul Adams; Alexandre M J J Bonvin; Wah Chiu; Matteo Dal Peraro; Frank Di Maio; Thomas E Ferrin; Kay Grünewald; Aleksandras Gutmanas; Richard Henderson; Gerhard Hummer; Kenji Iwasaki; Graham Johnson; Catherine L Lawson; Jens Meiler; Marc A Marti-Renom; Gaetano T Montelione; Michael Nilges; Ruth Nussinov; Ardan Patwardhan; Juri Rappsilber; Randy J Read; Helen Saibil; Gunnar F Schröder; Charles D Schwieters; Claus A.M Seidel; Dmitri Svergun; Maya Topf; Eldon L Ulrich; Sameer Velankar; John D Westbrook

doi:10.1016/j.str.2015.05.013

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Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

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Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

Andrej Sali, Helen M Berman, Torsten Schwede, Jill Trewhella, Gerard Kleywegt, Stephen K Burley, John Markley, Haruki Nakamura, Paul Adams, Alexandre M J J Bonvin, …

Structure (London), Vol.23(7), pp.1156-67

07/07/2015

DOI: https://doi.org/10.1016/j.str.2015.05.013

PMCID: PMC4933300

PMID: 26095030

Abstract

Bioinformatics

Computer Science

Structures of biomolecular systems are increasingly computed by integrative modeling that relies on varied types of experimental data and theoretical information. We describe here the proceedings and conclusions from the first wwPDB Hybrid/Integrative Methods Task Force Workshop held at the European Bioinformatics Institute in Hinxton, UK, on October 6 and 7, 2014. At the workshop, experts in various experimental fields of structural biology, experts in integrative modeling and visualization, and experts in data archiving addressed a series of questions central to the future of structural biology. How should integrative models be represented? How should the data and integrative models be validated? What data should be archived? How should the data and models be archived? What information should accompany the publication of integrative models?

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Title: Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop
Creators: Andrej Sali - Department of Bioengineering and Therapeutic Sciences
Helen M Berman - Research Collaboratory for Structural Bioinformatics Protein Data Bank
Torsten Schwede
Jill Trewhella - School of Molecular and Microbial Biosciences
Gerard Kleywegt - Protein Data Bank in Europe, European Molecular Biology Laboratory
Stephen K Burley - Research Collaboratory for Structural Bioinformatics Protein Data Bank
John Markley - BioMagResBank, Department of Biochemistry
Haruki Nakamura - Institute for Protein Research [Osaka]
Paul Adams - Physical Biosciences Division [LBNL Berkeley]
Alexandre M J J Bonvin - Bijvoet Center for Biomolecular Research [Utrecht]
Wah Chiu - National Center for Environmental Assessment
Matteo Dal Peraro - Institute of Bioengineering
Frank Di Maio - Department of Biochemistry [Washington ]
Thomas E Ferrin - Department of Bioengineering and Therapeutic Sciences
Kay Grünewald - Division of Structural Biology
Aleksandras Gutmanas - Protein Data Bank in Europe, European Molecular Biology Laboratory
Richard Henderson - Laboratory of Molecular Biology [Cambridge]
Gerhard Hummer - Department of Theoretical Biophysics [Frankfurt am Main]
Kenji Iwasaki - Institute for Protein Research [Osaka]
Graham Johnson - Department of Bioengineering and Therapeutic Sciences
Catherine L Lawson - Research Collaboratory for Structural Bioinformatics Protein Data Bank
Jens Meiler - Department of Chemistry, Center for Structural Biology
Marc A Marti-Renom - Genome Biology Group, Centre Nacional d'Anàlisi Genòmica (CNAG), Gene Regulation, Stem Cells and Cancer Program
Gaetano T Montelione - Department of Biochemistry
Michael Nilges - Bioinformatique structurale - Structural Bioinformatics
Ruth Nussinov - Cancer and Inflammation Program, Leidos Biomedical Research Inc., Frederick National Laboratory
Ardan Patwardhan - Protein Data Bank in Europe, European Molecular Biology Laboratory
Juri Rappsilber - Wellcome Trust Centre for Cell Biology
Randy J Read - Department of Haematology
Helen Saibil - Department of Biological Sciences
Gunnar F Schröder - Institute of Complex Systems
Charles D Schwieters - Division of Computational Bioscience
Claus A.M Seidel - Chair for Molecular Physical Chemistry
Dmitri Svergun
Maya Topf - Department of Biological Sciences
Eldon L Ulrich - BioMagResBank, Department of Biochemistry
Sameer Velankar - Protein Data Bank in Europe, European Molecular Biology Laboratory
John D Westbrook - Research Collaboratory for Structural Bioinformatics Protein Data Bank
Publication Details: Structure (London), Vol.23(7), pp.1156-67
Date published: 07/07/2015
Publisher: Elsevier (Cell Press)
Academic Unit: Center for Advanced Biotechnology and Medicine; Chemistry and Chemical Biology (SAS); Institute for Quantitative Biomedicine
Language: English
Resource Type: Journal article
Identifiers: 991031666023904646