The Nucleic Acid Database: new features and capabilities

Buvaneswari Coimbatore Narayanan; John Westbrook; Saheli Ghosh; Anton I Petrov; Blake Sweeney; Craig L Zirbel; Neocles B Leontis; Helen M Berman

doi:10.1093/nar/gkt980

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The Nucleic Acid Database: new features and capabilities

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The Nucleic Acid Database: new features and capabilities

Buvaneswari Coimbatore Narayanan, John Westbrook, Saheli Ghosh, Anton I Petrov, Blake Sweeney, Craig L Zirbel, Neocles B Leontis and Helen M Berman

Nucleic acids research, Vol.42(Database issue), pp.D114-D122

01/01/2014

DOI: https://doi.org/10.1093/nar/gkt980

PMCID: PMC3964972

PMID: 24185695

Abstract

I. Nucleic acid sequence, structure and regulation

The Nucleic Acid Database (NDB) ( http://ndbserver.rutgers.edu ) is a web portal providing access to information about 3D nucleic acid structures and their complexes. In addition to primary data, the NDB contains derived geometric data, classifications of structures and motifs, standards for describing nucleic acid features, as well as tools and software for the analysis of nucleic acids. A variety of search capabilities are available, as are many different types of reports. This article describes the recent redesign of the NDB Web site with special emphasis on new RNA-derived data and annotations and their implementation and integration into the search capabilities.

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Title: The Nucleic Acid Database: new features and capabilities
Creators: Buvaneswari Coimbatore Narayanan - Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, the State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA
John Westbrook - Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, the State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA
Saheli Ghosh - Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, the State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA
Anton I Petrov - Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, the State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA
Blake Sweeney - Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, the State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA
Craig L Zirbel - Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, the State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA
Neocles B Leontis - Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, the State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA
Helen M Berman - Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, the State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA
Publication Details: Nucleic acids research, Vol.42(Database issue), pp.D114-D122
Date published: 01/01/2014
Publisher: Oxford University Press
Academic Unit: Chemistry and Chemical Biology (SAS); Institute for Quantitative Biomedicine
Language: English
Resource Type: Journal article
Identifiers: 991031666242504646